Introduction to Perl and BioPerl
This note explains the following topics: Perl program structure, Variable types, Scalars , Pragmas , Operators , Arrays , Hashes , Control structures, Loop modifers, Subroutines , Reading and Writing a file, Filehandles , Regular expressions, Regex anchors and operators, Running perl, POD tools, What is Bioperl, Gotchas , Objects in Perl, Interfaces and Inheritance in Bioperl, Bioperl components, Parse a sequence from file, output, Read in sequence and write out in different format, Sequence Databases.
Author(s): Heikki Lehväslaiho
104 Pages 
This PDF covers the following topics related to Perl : Getting Started with Perl, Arrays, Hashes and Loops, File Handling, Regular Expressions, Subroutines, References and Complex Data Structures, Perl Modules, Interacting with external programs.
Author(s): Babraham BioInformatics
76 Pages
The aim of this note is to give you not just an understanding of the workings of the perl interpreter, but also the means to investigate more about it, to analyze and solve bugs in the Perl core, and to take part in the Perl development process.
Author(s): Simon Cozens
NA Pages
This note covers the following topics: the basics, arrays, program arguments and conditionals,, reading and writing to files, more loops and some math in perl, subroutines,, hashes associative arrays, string manipulation, more regular expressions, file and directory manipulation, time and perl modules, system commands, network modules, programming techniques and review.
Author(s): Mark Tucker
NA Pages
Picking Up Perl, 2nd Edition (B.M. Kuhn, N.A. Smyth)
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Beginning Perl (by Simon Cozens)Mirror
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PracticalPerl Programming (D. Marshall)
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